Bird Seed Agar- Composition, Principle, Preparation, Results, Uses, Limitations

Bird Seed Agar is a solid medium used for selective and differential isolation of Cryptococcus neoformans from clinical specimens. It is used for the selective isolation of Cryptococcus neoformans and C. gattii. C. neoformans usually grows as a yeast (unicellular) and replicates by budding. Cryptococcus neoformans is an encapsulated yeast that produces the enzyme phenoloxidase, an enzyme necessary in melanin synthesis. The brown pigmented colonies of Cryptococcus neoformans were observed by Staib in 1962 when he grew cultures of the yeast on media containing Guizotia abyssinica seeds. It was later determined that the seeds contain caffeic acid, which served as the melanin-producing substrate. Birdseed agar became a generic name for the Staib’s agar medium.  In 1966, Shields and Ajello modified Staib’s Birdseed Agar by adding the antibiotic to make it more selective. It is also known as Caffeic Acid Agar or Niger Seed Agar or Staib Agar.

Composition of Bird Seed Agar

Ingredients Grams/Litre
Guizotia abyssinica (niger seed)50
Glucose1
KH2PO4 (potassium dihydrogen orthophosphate)1
Creatinine1
Agar15

Final pH 6.5 +/- 0.3 at 25ºC.

Additives: to each 500 ml bottle.

  • Penicillin G (20 units/ml) 1 mL
  • Gentamicin (40 mg/ml) 1 mL

Principle of Bird Seed Agar

Birdseed agar comprises Guizotia abyssinica seeds, creatinine, and dextrose which provide nutrients for the growth of C. neoformans. The extract of Guizotia abyssinica seeds contains caffeic acid which serves as a substrate for the detection of phenoloxidase, an enzyme produced by C. neoformans. The action of phenoloxidase on caffeic acid results in the production of melanin which is absorbed by the yeast cell wall forming a tan to reddish-brown pigmentation. Glucose is the energy source in the medium. Creatinine enhances the melanization of some strains of C. neoformans. Antibiotic added such as chloramphenicol inhibits the bacteria as well as rapidly growing molds that often overgrow the slow-growing dimorphic fungi. Agar is the solidifying agent.

Preparation of Bird Seed Agar

  1. Mix the grinded seeds of Guizotia abyssinica with 1000 ml of distilled water.
  2. Boil for 30 minutes, pass through filter paper and adjust volume to 1000 ml.
  3. Add remaining ingredients to filtrate and dissolve.
  4. Autoclave at 110°C for 15-20 minutes.
  5. Cool to 48°C and add 0.5 ml Penicillin G and 0.5 ml Gentamicin to each 500 ml of Bird Seed Agar.
  6. Mix gently and pour into petri dishes

Result Interpretation of Bird Seed Agar

Result Interpretation of Bird Seed Agar

Result Colony characteristics Organisms
PositiveDevelopment of brown to black pigmented smooth colonies.Cryptococcus neoformans
NegativeNon-pigmented coloniesCryptococcus laurentii, Saccharomyces cerevisiae

Uses of Bird Seed Agar

  1. It is used for the selective isolation and differentiation of Cryptococcus neoformans from other yeasts, including other Cryptococcus species obtained from different clinical and environmental samples.

Limitations of Bird Seed Agar

  1. Rare strains of C. neoformans may not produce pigmented colonies
  2. Specimens heavily contaminated with bacteria may obscure growth and/or pigmentation of C. neoformans.
  3. Aureobasidium, Sporothrix, Wangiella and Phialophora may produce dark brown colonies, but the pigment will not be a result of enzymatic activity which is made evident by pigmentation developing in colonies on all media.
  4. Organisms that produce pigmentation on bird seed agar should be compared with growth of the same organism on another medium such as Sabouraud Dextrose agar, in order to determine and cross check if the organism is naturally pigmented.

References

  1. Bird Seed Agar. Mycology Online.
  2. Ronald M. Atlas and James W. Snyder. Handbook of media for clinical and public health microbiology. CRC Press. 2014 by Taylor & Francis Group, LLC
  3. http://himedialabs.com/TD/M675.pdf
  4. https://catalog.hardydiagnostics.com/cp_prod/Content/hugo/CaffeicAcidAgar.htm
  5. https://www.labce.com/spg603077_recommended_procedure_for_identification_of_crypto.aspx
  6. https://tools.thermofisher.com/content/sfs/manuals/IFU8172.pdf
  7. Pham CD, Ahn S, Turner LA, Wohrle R, Lockhart SR. Development and Validation of Benomyl Birdseed Agar for the Isolation of Cryptococcus neoformans and Cryptococcus gattii from Environmental Samples. Medical mycology. 2014;52(4):417-421. doi:10.1093/mmy/myt028.

About Author

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Sagar Aryal, PhD

Dr. Sagar Aryal is a microbiologist, researcher, and science communicator from Nepal. He is also co-founder and Research Head of the Department of Natural Products at the Kathmandu Research Institute for Biological Sciences (KRIBS), where he leads research on natural product discovery and microbial biodiversity. Dr. Aryal earned his Ph.D. in Microbiology from Tribhuvan University, Kathmandu, Nepal, in 2025, supported by a DAAD Research Grant and a University Grants Commission (UGC) Nepal Ph.D. Fellowship. His research interests include Actinomycetes, Myxobacteria, microbial taxonomy, and natural products, particularly the discovery of bioactive compounds with potential pharmaceutical applications. He isolated and identified Nocardia nepalensis, a novel bacterial species from Nepal, contributing to understanding microbial diversity in the region. Dr. Aryal has published more than 16 research articles in international journals and contributed three book chapters to established academic publications. He has presented scientific research findings and developed international research collaborations through visits to more than 18 countries across Asia, Europe, North America, and Oceania. From 2023 to 2025, he served as the American Society for Microbiology (ASM) Young Ambassador to Nepal. Since December 2025, he has served as an Editorial Board Member of Scientific Reports, a Nature Portfolio journal. In recognition of his scientific contributions, Dr. Aryal received the NAST Science and Technology Youth Award 2025 from the Nepal Academy of Science and Technology. He previously received the Frs. Locke and Stiller Research Award (LSRA) for the 2017-2018 cycle from St. Xavier's College, Kathmandu, and a Nepal Academy of Science and Technology (NAST) Research Grant for 2017-2018. Alongside his scientific career, Dr. Aryal has more than 15 years of experience in blogging, content writing, and search engine optimization (SEO).

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