Malonate Test- Objectives, Principle, Procedure and Results

Objectives of Malonate Test

  • To test the ability of the organism to utilize malonate as sole source of carbon.
  • The Malonate Test was originally designed to differentiate between Escherichia, which will not grow in the medium, and Enterobacter.
  • Its use as a differential medium has now broadened to include other members of Enterobacteriaceae.

Principle of Malonate Test

An organism that simultaneously can utilize sodium malonate as its carbon source and ammonium sulfate as its nitrogen source produces an alkalinity due to the formation of sodium hydroxide. The medium used for malonate utilization test is malonate broth. It contains mineral salts, sodium malonate for carbon, and ammonium sulfate for its nitrogen source. The pH indicator is bromothymol blue, which is green at neutral pH, yellow at acidic pH <6.0 and turns blue at alkaline (basic) pH >7.6. Organisms which simultaneously utilize malonate and ammonium sulfate produce sodium hydroxide which thereby results in an alkaline reaction and changes the indicator from its original green color to light blue or Prussian blue. Organisms which cannot utilize malonate and ammonium sulfate and do not ferment dextrose produce no color change. Organisms which are malonate-negative but do ferment dextrose result in the development of a yellow color due to increased acidity in the medium.

Media Used in Malonate Test

Malonate broth (1000 ml)

Sodium Malonate 3.0gm
Ammonium Sulfate 2.0gm
Sodium Chloride 2.0gm
Yeast Extract 1.0gm
Dipotassium Phosphate 0.6gm
Monopotassium Phosphate 0.4gm
Dextrose 0.25gm
Bromothymol Blue 0.025gm

Final pH 6.7 +/- 0.2 at 25ºC.

Procedure of Malonate Test

  1. Inoculate the tube containing malonate broth with 18-24 hours pure culture of the organism.
  2. Incubate the tube with loosened caps at 35ºC in an aerobic atmosphere for 24-48 hours.
  3. Observe for color change in the medium.

Result Interpretation of Malonate Test

Result Interpretation of Malonate Test

Positive test: development of a blue color in the medium

Negative test: media remains green or turns yellow due to dextrose fermentation

Limitations of Malonate Test

  • The test organisms must be in pure culture and 18-24 hours old.
  • Some malonate-positive organisms produce only a slight alkalinity which renders difficulty in interpretation. Questionable and doubtful results should be compared with an uninoculated malonate tube. Any trace of blue color is indicative of a positive test after 48 hours of incubation.
  • Yeast extract and glucose are needed to stimulate growth of some Salmonella
    organisms but are not generally necessary for other species.

Quality Control of Malonate Test

Klebsiella pneumoniae, ATCC13883- positive test, broth turns deep blue.

Escherichia coli, ATCC25922- negative test, broth remains green.

About Author

Photo of author

Sagar Aryal, PhD

Dr. Sagar Aryal is a microbiologist, researcher, and science communicator from Nepal. He is also co-founder and Research Head of the Department of Natural Products at the Kathmandu Research Institute for Biological Sciences (KRIBS), where he leads research on natural product discovery and microbial biodiversity. Dr. Aryal earned his Ph.D. in Microbiology from Tribhuvan University, Kathmandu, Nepal, in 2025, supported by a DAAD Research Grant and a University Grants Commission (UGC) Nepal Ph.D. Fellowship. His research interests include Actinomycetes, Myxobacteria, microbial taxonomy, and natural products, particularly the discovery of bioactive compounds with potential pharmaceutical applications. He isolated and identified Nocardia nepalensis, a novel bacterial species from Nepal, contributing to understanding microbial diversity in the region. Dr. Aryal has published more than 16 research articles in international journals and contributed three book chapters to established academic publications. He has presented scientific research findings and developed international research collaborations through visits to more than 18 countries across Asia, Europe, North America, and Oceania. From 2023 to 2025, he served as the American Society for Microbiology (ASM) Young Ambassador to Nepal. Since December 2025, he has served as an Editorial Board Member of Scientific Reports, a Nature Portfolio journal. In recognition of his scientific contributions, Dr. Aryal received the NAST Science and Technology Youth Award 2025 from the Nepal Academy of Science and Technology. He previously received the Frs. Locke and Stiller Research Award (LSRA) for the 2017-2018 cycle from St. Xavier's College, Kathmandu, and a Nepal Academy of Science and Technology (NAST) Research Grant for 2017-2018. Alongside his scientific career, Dr. Aryal has more than 15 years of experience in blogging, content writing, and search engine optimization (SEO).