Extension <\/strong>of the primer-target duplex.<\/span><\/li>\n<\/ol>\nDenaturation<\/strong><\/span><\/p>\n\n- The reaction mixture is heated to 95\u00b0C for a short time period (about 15\u201330 sec) to denature the target DNA into single strands that can act as templates for DNA synthesis.<\/span><\/li>\n<\/ul>\n
Primer annealing<\/strong><\/span><\/p>\n\n- The mixture is rapidly cooled to a defined temperature which allows the two primers to bind to the sequences on each of the two strands flanking the target DNA.<\/span><\/li>\n
- Primers are short, single-stranded sequences of nucleic acid (i.e., oligonucleotides usually 20 to 30 nucleotides long) selected to specifically hybridize (anneal) to a particular nucleic acid target, essentially functioning like probes.<\/span><\/li>\n
- This annealing temperature is calculated carefully to ensure that the primers bind only to the desired DNA sequences (usually around 55o<\/sup>C).<\/span><\/li>\n
- One primer binds to each strand. The two parental strands do not re-anneal with each other because the primers are in large excess over parental DNA.<\/span><\/li>\n<\/ul>\n
Extension<\/strong><\/span><\/p>\n\n- The temperature of the mixture is raised to 72\u00b0C (usually) and kept at this temperature for a pre-set period of time to allow DNA polymerase to elongate each primer by copying the single-stranded templates.<\/span><\/li>\n
- Annealing of primers to target sequences provides the necessary template format that allows the DNA polymerase to add nucleotides to the 3\u2019 terminus (end) of each primer and extend sequence complementary to the target template<\/span><\/li>\n
- Taq polymerase is the enzyme commonly used for primer extension, which occurs at 72\u00b0C. This enzyme is used because of its ability to function efficiently at elevated temperatures and to withstand the denaturing temperature of 94\u00b0C through several cycles.<\/span><\/li>\n
- The ability to allow primer annealing and extension to occur at elevated temperatures without detriment to the polymerase increases the stringency of the reaction, thus decreasing the chance for amplification of non-target nucleic acid (i.e., nonspecific amplification).<\/span><\/li>\n<\/ul>\n
The three steps of the PCR cycle are repeated.<\/span><\/p>\n\n- Thus in the second cycle, the four strands denature, bind primers and are extended. No other reactants need to be added. The three steps are repeated for a third cycle and so on for a set of additional cycles.<\/span><\/li>\n
- By the third cycle, some of the PCR products represent DNA sequence only between the two primer sites and the sequence does not extend beyond these sites.<\/span><\/li>\n
- As more and more reaction cycles are carried out, the double-stranded DNA are synthesized more in number. After 20 cycles, the original DNA has been amplified a million-fold and this rises to a billion fold (1000) million after 30 cycles.<\/span><\/li>\n<\/ul>\n